Online Supplemental Material
The contents of this page are supplemental data to Gene Networks in Drosophila melanogaster: Integrating experimental data to predict gene function (submitted to Genome Biology).
- Supplemental Figures and Tables
- Matrix of p-values for used to construct the GO term vs. Dataset image
- GO term vs. Datasets (Additional data file 1)
- Network constructed from top 20,000 gene pairs. Formatted as a Cytoscape .cys session file. The session contains the network laid out with nodes labeled with gene names and the top 20 gene clusters identified through the MCODE plug-in. Extensive documentation is provided through the cytoscape.org website. Right-clicking on any node will bring up a menu that provides a link-out to FlyBase.
- 20k network.cys
- Launch network in Cytoscape using Java Webstart (Click Cytoscape logo)
readme - Network constructed from top 200,000 gene pairs. Formatted as a Cytoscape .cys session file. The session contains the network laid out with nodes labeled with gene names and the top 20 gene clusters identified through the MCODE plug-in. Extensive documentation is provided through the cytoscape.org website. Right-clicking on any node will bring up a menu that provides a link-out to FlyBase.
- 200k network.cys
- Launch network in Cytoscape using Java Webstart (Click Cytoscape logo) readme
- The full set of 25 million relationships and the corresponding log-likelihood scores for each dataset.
- GO biological process predictions using the Markov random field method and the network with 20k gene pairs.
- 20k predictions (Additional File 2)
- GO biological process predictions using the Markov random field method and the network with 200k gene pairs.
- 200k predictions (Additional File 3)
- GO biological process predictions using the Markov random field method and the network with 20k gene pairs. These predictions have been filtered to 424 genes.
- Analysis of predictions on 483 genes (Additional File 4)
- Annotation of the 70 gene network cluster of signal recognition particle (SRP)-related genes.
- SRP-related network information (Additional File 5)